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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 11:32:08 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 11:32:08 +0100 |
| commit | 58d8225ddba23245421bdc0cc9d8b138bc23b0ea (patch) | |
| tree | f23f3ac09c808504000d8ac7be67a07a2f1e4e75 | |
| parent | 5f1e31094d390a85bb91e8df1efbcb2dd2e39cf4 (diff) | |
| download | gnu-guix-58d8225ddba23245421bdc0cc9d8b138bc23b0ea.tar gnu-guix-58d8225ddba23245421bdc0cc9d8b138bc23b0ea.tar.gz | |
gnu: trim-galore: Add pigz.
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3f94ef54cd..a0b44e5bbb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10920,7 +10920,11 @@ with narrow binding events such as transcription factor ChIP-seq.") (("\"gunzip") (string-append "\"" (assoc-ref inputs "gzip") - "/bin/gunzip"))) + "/bin/gunzip")) + (("\"pigz") + (string-append "\"" + (assoc-ref inputs "pigz") + "/bin/pigz"))) #t)) (replace 'install (lambda* (#:key outputs #:allow-other-keys) @@ -10932,6 +10936,7 @@ with narrow binding events such as transcription factor ChIP-seq.") (inputs `(("gzip" ,gzip) ("perl" ,perl) + ("pigz" ,pigz) ("cutadapt" ,cutadapt))) (native-inputs `(("unzip" ,unzip))) |