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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-04-06 14:29:47 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-04-06 14:39:22 +0200 |
| commit | 0685fe3c86a5fe1ed78b71ae4e41acd841f38da4 (patch) | |
| tree | bdcff8f05f4ed0b302ad38b449634527b2d2db77 | |
| parent | 133cba8cb5c278080ae701fba1c339ae50cc124f (diff) | |
| download | gnu-guix-0685fe3c86a5fe1ed78b71ae4e41acd841f38da4.tar gnu-guix-0685fe3c86a5fe1ed78b71ae4e41acd841f38da4.tar.gz | |
gnu: r-rcpparmadillo: Update to 0.7.700.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 8 | ||||
| -rw-r--r-- | gnu/packages/statistics.scm | 21 |
2 files changed, 3 insertions, 26 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6885a74f7c..e540627012 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5497,14 +5497,6 @@ high-throughput sequencing experiments.") "1walwkqryn1gnwz7zryr5764a0p6ia7ag4w6w9n8fskg8dkg0fqs")))) (properties `((upstream-name . "DESeq2"))) (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'link-against-armadillo - (lambda _ - (substitute* "src/Makevars" - (("PKG_LIBS =" prefix) - (string-append prefix "-larmadillo")))))))) (propagated-inputs `(("r-biobase" ,r-biobase) ("r-biocgenerics" ,r-biocgenerics) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 6b05f8553e..fcc7e303a8 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2443,32 +2443,17 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.7.600.1.0") + (version "0.7.700.0.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0k1wniip184j0ckcg9kcjy2q4mcfj5jpd1nkk4l0ab75ad8znywv")) - (modules '((guix build utils))) - ;; Remove bundled armadillo sources - (snippet - '(begin - (delete-file-recursively "inst/include/armadillo_bits") - (delete-file "inst/include/armadillo"))))) + "03cvl2xgmvh4sylw7ff7s020y7k2wzyj34l0zngm09qs44pa9q0m")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'link-against-armadillo - (lambda _ - (substitute* "src/Makevars" - (("PKG_LIBS=" prefix) - (string-append prefix "-larmadillo")))))))) (propagated-inputs - `(("r-rcpp" ,r-rcpp) - ("armadillo" ,armadillo-for-rcpparmadillo))) + `(("r-rcpp" ,r-rcpp))) (home-page "https://github.com/RcppCore/RcppArmadillo") (synopsis "Rcpp integration for the Armadillo linear algebra library") (description |