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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-06-14 14:50:30 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-06-15 17:08:08 +0200
commit4714d521e3b5bcc6e2800ab377cb470cab09a595 (patch)
tree14ed38acd9f26bcf0b636acf8f3efdff1cfbf3d6
parentc4e48b68bdf41e7f6805473fc4f545b215251c6d (diff)
downloadgnu-guix-4714d521e3b5bcc6e2800ab377cb470cab09a595.tar
gnu-guix-4714d521e3b5bcc6e2800ab377cb470cab09a595.tar.gz
gnu: Add r-bsgenome-mmusculus-ucsc-mm10.
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 58877f7c61..04ed769cd8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5019,6 +5019,38 @@ by UCSC (hg19, February 2009) and stored in Biostrings objects.")
provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-mmusculus-ucsc-mm10
+ (package
+ (name "r-bsgenome-mmusculus-ucsc-mm10")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Mmusculus.UCSC.mm10_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
+ (properties
+ `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "http://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
+ (synopsis "Full genome sequences for Mouse")
+ (description
+ "This package provides full genome sequences for Mus
+musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
+in Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")