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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 12:19:04 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 12:27:16 +0100 |
| commit | 48f27914966b00958dc9d4b26fd24a6a7f1874d1 (patch) | |
| tree | 27a3232881e53c75650a2eaa33dad2b92399f131 | |
| parent | f93ec63ccff888c1b42934bae6d4ee5fe2bf453d (diff) | |
| download | gnu-guix-48f27914966b00958dc9d4b26fd24a6a7f1874d1.tar gnu-guix-48f27914966b00958dc9d4b26fd24a6a7f1874d1.tar.gz | |
gnu: r-scater: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.0.
[propagated-inputs]: Add r-biocparallel; remove r-biobase, r-data-table,
r-edger, r-limma, r-rhdf5, r-rjson, r-shiny, r-shinydashboard, and r-tximport.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 3 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d8b248814d..f359983bf2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10959,39 +10959,31 @@ libraries.") (define-public r-scater (package (name "r-scater") - (version "1.8.4") + (version "1.10.0") (source (origin (method url-fetch) (uri (bioconductor-uri "scater" version)) (sha256 (base32 - "173lfpas2fqsp4xxsw01wkxd4496c5p8himw9b4r9z4npxkfyv16")))) + "1kwa9n70c5j0xcj6nkmlkzjr63cnj78mp8nhg58n07fq1ijm4ns3")))) (build-system r-build-system) (propagated-inputs `(("r-beachmat" ,r-beachmat) - ("r-biobase" ,r-biobase) ("r-biocgenerics" ,r-biocgenerics) - ("r-data-table" ,r-data-table) + ("r-biocparallel" ,r-biocparallel) ("r-delayedarray" ,r-delayedarray) ("r-delayedmatrixstats" ,r-delayedmatrixstats) ("r-dplyr" ,r-dplyr) - ("r-edger" ,r-edger) ("r-ggbeeswarm" ,r-ggbeeswarm) ("r-ggplot2" ,r-ggplot2) - ("r-limma" ,r-limma) ("r-matrix" ,r-matrix) ("r-plyr" ,r-plyr) ("r-rcpp" ,r-rcpp) ("r-reshape2" ,r-reshape2) - ("r-rhdf5" ,r-rhdf5) ("r-rhdf5lib" ,r-rhdf5lib) - ("r-rjson" ,r-rjson) ("r-s4vectors" ,r-s4vectors) - ("r-shiny" ,r-shiny) - ("r-shinydashboard" ,r-shinydashboard) ("r-singlecellexperiment" ,r-singlecellexperiment) ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-tximport" ,r-tximport) ("r-viridis" ,r-viridis))) (home-page "https://github.com/davismcc/scater") (synopsis "Single-cell analysis toolkit for gene expression data in R") |