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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-16 18:16:50 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-11-24 15:22:28 +0100 |
| commit | 5dc82a7f8b08d0e7816107e60625badb090ad97a (patch) | |
| tree | 84e622c06b8eb246069a8f6f5d9ee5fb2104c1c8 | |
| parent | 610616d4489fe9c066ffab4bc17f95f5cec40339 (diff) | |
| download | guix-5dc82a7f8b08d0e7816107e60625badb090ad97a.tar guix-5dc82a7f8b08d0e7816107e60625badb090ad97a.tar.gz | |
gnu: Add r-alevinqc.
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 330ab8c77d..975e36bb54 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2301,6 +2301,40 @@ paired or unpaired study designs.") ;; package's LICENSE is specified as GPL-3. (license (list license:agpl3+ license:gpl2+ license:gpl3)))) +(define-public r-alevinqc + (package + (name "r-alevinqc") + (version "1.12.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "alevinQC" version)) + (sha256 + (base32 + "0g75qnz7ah0widdjn99lhvnacz38vgl9j86n65wyswsf413hz3bb")))) + (properties `((upstream-name . "alevinQC"))) + (build-system r-build-system) + (propagated-inputs + (list r-cowplot + r-dplyr + r-dt + r-ggally + r-ggplot2 + r-rcpp + r-rjson + r-rlang + r-rmarkdown + r-shiny + r-shinydashboard + r-tximport)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/csoneson/alevinQC") + (synopsis "Quality control reports for @code{Alevin} output") + (description + "The package @code{r-alevinqc} generates quality control reports +summarizing the output from an @code{alevin} run. The reports can be +generated as HTML or PDF files, or as Shiny applications.") + (license license:expat))) + (define-public r-alphabeta (package (name "r-alphabeta") |