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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-11-24 17:59:52 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-11-24 18:02:15 +0100 |
| commit | 139da51753717a06692bd87a754f54b4e60f4fcd (patch) | |
| tree | 70f3dabd7e5d28a32c5eafb5c0dc3ea3e9b6d365 | |
| parent | 90d8ac279fcffe12969e0bdd43a07363c212942e (diff) | |
| download | guix-139da51753717a06692bd87a754f54b4e60f4fcd.tar guix-139da51753717a06692bd87a754f54b4e60f4fcd.tar.gz | |
gnu: Add r-mia.
* gnu/packages/bioconductor.scm (r-mia): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 17d5195ce5..0d4110bc20 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10027,6 +10027,54 @@ to identify differentially methylated regions in epigenetic epidemiology studies.") (license license:artistic2.0))) +(define-public r-mia + (package + (name "r-mia") + (version "1.6.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "mia" version)) + (sha256 + (base32 + "0yz88ggv6d5rccdwzixwg9y1bc4xysazlmv1ph88wxs8r6fcmync")))) + (properties `((upstream-name . "mia"))) + (build-system r-build-system) + (propagated-inputs + (list r-ape + r-biocgenerics + r-biocparallel + r-biostrings + r-decipher + r-decontam + r-delayedarray + r-delayedmatrixstats + r-dirichletmultinomial + r-dplyr + r-iranges + r-mass + r-multiassayexperiment + r-rlang + r-s4vectors + r-scater + r-scuttle + r-singlecellexperiment + r-summarizedexperiment + r-tibble + r-tidyr + r-treesummarizedexperiment + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/microbiome/mia") + (synopsis "Microbiome analysis") + (description + "The mia package implements tools for microbiome analysis based on the +@code{SummarizedExperiment}, @code{SingleCellExperiment} and +@code{TreeSummarizedExperiment} infrastructure. Data wrangling and analysis +in the context of taxonomic data is the main scope. Additional functions for +common task are implemented such as community indices calculation and +summarization.") + (license license:artistic2.0))) + (define-public r-microbiome (package (name "r-microbiome") |